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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "scMaSigPro" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'scMaSigPro: Differential Expression Analysis Along Single-Cell Trajectories'
version: 0.6.0
doi: 10.1093/bioinformatics/btae443
identifiers:
- type: doi
  value: 10.32614/CRAN.package.scMaSigPro
- type: url
  value: https://spriyansh.github.io/scMaSigPro/
abstract: Identifies genes whose expression changes along single-cell pseudotime and
  differs between the branching paths of a trajectory. Cells are pseudo-bulked into
  pseudotime bins that preserve their ordering, and the polynomial generalised linear
  model of the 'maSigPro' package is fitted to the binned counts with a negative binomial
  family and size-factor offsets. Methods are described in Srivastava et al. (2024)
  <https://doi.org/10.1093/bioinformatics/btae443>.
authors:
- family-names: Conesa
  given-names: Ana
  email: ana.conesa@csic.es
  orcid: https://orcid.org/0000-0001-9597-311X
- family-names: Nueda
  given-names: María José
  email: mj.nueda@ua.es
  orcid: https://orcid.org/0000-0002-1666-4771
- family-names: Srivastava
  given-names: Priyansh
  email: spriyansh29@gmail.com
  orcid: https://orcid.org/0000-0003-2618-5296
- family-names: Benegas Coll
  given-names: Marta
  email: martabc22@gmail.com
  orcid: https://orcid.org/0009-0004-9886-2828
preferred-citation:
  type: article
  title: 'scMaSigPro: differential expression analysis along single-cell trajectories'
  authors:
  - family-names: Srivastava
    given-names: Priyansh
    email: spriyansh29@gmail.com
    orcid: https://orcid.org/0000-0003-2618-5296
  - family-names: Benegas Coll
    given-names: Marta
    email: martabc22@gmail.com
    orcid: https://orcid.org/0009-0004-9886-2828
  - family-names: Götz
    given-names: Stefan
  - family-names: Nueda
    given-names: María José
    email: mj.nueda@ua.es
    orcid: https://orcid.org/0000-0002-1666-4771
  - family-names: Conesa
    given-names: Ana
    email: ana.conesa@csic.es
    orcid: https://orcid.org/0000-0001-9597-311X
  journal: Bioinformatics
  year: '2024'
  volume: '40'
  issue: '7'
  doi: 10.1093/bioinformatics/btae443
  start: btae443
repository: https://spriyansh.r-universe.dev
repository-code: https://github.com/BioBam/scMaSigPro
commit: f7b543ea6091ac73db96185a10dc625866b1c08d
url: https://github.com/BioBam/scMaSigPro/
date-released: '2026-10-28'
contact:
- family-names: Srivastava
  given-names: Priyansh
  email: spriyansh29@gmail.com
  orcid: https://orcid.org/0000-0003-2618-5296